I am a Biochemistry major and Music minor at Wellesley College, and I plan to pursue a Ph.D. in Biomedical Sciences. My career goal is to conduct research in biomedical science and advance the field of pharmaceutical medicine. As an undergraduate researcher in the Klepac-Ceraj Lab, I have worked on various engineering and computational projects with Dr. Kevin Bonham in which I have built tools to study microbial communities and to streamline analysis of metagenomic data. My current project investigates a method of using gut microbes to restore normal function in neurotransmitter deficient Caenorhabditis elegans, which may have important therapeutic implications for neurological conditions.
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Microbiome.jl is a Julia package to facilitate analysis of microbial community data. BiobakeryUtils.jl is built on top of Microbiome.jl, and provides utilities for working with a suite of command line tools (the bioBakery) that are widely used for converting raw metagenomic sequencing data into tables of taxon and gene function counts. Together, these packages provide an effective way to link microbial community data with the power of Julia’s numerical, statistical, and plotting libraries.